时空组学数据库_时空组学资源_STOmics - 华大时空

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时空数据库

时空数据库

时空数据库

时空数据库

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时空数据库

时空数据库

时空数据库

由深圳华大生命科学研究院联合深圳国家基因库共同研发的时空组学数据库V1.0版本 (STOmicsDB)在国家基因库生命大数据平台 (CNGBdb) 于2022年正式上线，致力于促进时空组学的数据探索和学术研究。

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时空数据库

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Spatial transcriptome uncovers the mouse lung architectures and functions

Spatial transcriptome uncovers the mouse lung architectures and functions

Revealing the relationships between the tissue structures and transcriptomic information is significant for understanding the mechanisms and principles underpinning the biological processes in lung development and diseases. The widely transcriptomic technics, including bulk and single-cell RNA sequencing, cannot accurately restore the tissue location of the gene expression.

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Spatial transcriptomic profile of cervical squamous cell carcinoma

To understand the etiological, structural, and immunological characteristics of cervical squamous cell carcinoma (CSCC), we conducted spatial transcriptomics (ST) experiments for cervical samples from 16 individuals.

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High-resolution spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae

High-resolution spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae

This database is intended to curate 3D spatial transcriptomes of all stages of Drosophila embryos and larvae generated by Stereo-seq. Drosophila melanogaster strain w1118 embryos were collected at two late stages (14-16 h and 16-18 h after egg laying, corresponding to stage 16~17 of embryogenesis) and all three stages were also collected.

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MOSTA: Mouse Organogenesis Spatiotemporal Transcriptomic Atlas

MOSTA: Mouse Organogenesis Spatiotemporal Transcriptomic Atlas

We have only begun to scratch the surface in understanding mammalian development. An overwhelming caveat is the lack of topographical transcriptomic information to correlate signaling cues and cell-cell interactions within the hierarchy of cell fate decisions. Spatially resolved transcriptomic technologies are promising tools to fill this gap.

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ZESTA: Zebrafish Embryogenesis Spatiotemporal Transcriptomic Atlas

ZESTA: Zebrafish Embryogenesis Spatiotemporal Transcriptomic Atlas

Vertebrate embryogenesis is a remarkably dynamic process during which numerous cell types of different lineages generate, change, or disappear within a short period. A major challenge in understanding this process is the lack of topographical transcriptomic information that can help correlate microenvironmental cues within the hierarchy of cell fate decisions.

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ARTISTA: Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas

ARTISTA: Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas

Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas (ARTISTA) is a spatially resolved transcriptomic data resource that provides visualization of gene expression across the regeneration and development stages of axolotl telencephalon at single cell resolution, aiming to provide a systematic dissection of the molecular events underlying neural regeneration in the axolotl brain, laying the foundation for further mechanistic studies.

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Soybean Organ Transcriptomic Atlas

Soybean Organ Transcriptomic Atlas

Disclosing Revealing the temporal and spatial expression of each gene is predominantly important critical for the understanding of plant organ development. To this end, There is increasing demand for the construction of an integrated transcriptomic atlases using different multiple types of transcriptome data as a means of achieving this aim is increasingly demanded.

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