SAW 用户手册 8.1

数据集

请访问 SAW demo 数据集页面：\ http://116.6.21.110:8090/share/21bb9df9-e6c5-47c5-9aa8-29f2d23a6df4

"Kit version" 记录的是运行 SAW count 分析流程时所使用的 --kit-version 参数信息。

Stereo-seq T Fresh Frozen (FF)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
SS200000135TL_D1_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.2	≥ SAW 5.5	Mouse	Healthy	Brain	ssDNA
SS200000059_NC_mouse_testis_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.2	≥ SAW 6.0	Mouse	Healthy	Testis	DAPI + 2 IF (AKAP3, TESK2)
FP200009107_E414_mouse_olfactory_bulb_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.2	≥ SAW 6.1	Mouse	Healthy	Olfactory bulb	DAPI
D02070C3D3_mouse_embryo_Stereo-seq_T_FF	1 cm x 2 cm	Stereo-seq T FF V1.2	≥ SAW 6.1	Mouse	Healthy	Embryo	DAPI
B01207E3G4_rat_brain_Stereo-seq_T_FF	2 cm x 3 cm	Stereo-seq T FF V1.2	≥ SAW 6.1	Rat	Healthy	Brain	ssDNA
C02533C1_mouse_kidney_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.2	≥ SAW 7.0	Mouse	Healthy	Kidney	H&E
C04042E2_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Brain	ssDNA
C04042E3_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Brain	H&E
B04372C214_mouse_tongue_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Tongue	H&E
C04687E314_mouse_eyeball_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Eyeball	H&E
B04372C211_FF1.3_mouse_ovary_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Ovary	H&E
C03937C4_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Brain	DAPI + 3 IF (CD31, NeuN, SIM32)

Stereo-CITE T Fresh Frozen (FF)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
A02677B5_mouse_thymus_Stereo-CITE	1 cm x 1 cm	Stereo-CITE T FF V1.0	≥ SAW 8.1 & SAW 7.1	Mouse	Healthy	Thymus	DAPI

Stereo-seq N Formalin Fixed & Paraffin Embedded (FFPE)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
C04144D5_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	ssDNA
C04138G3_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	H&E
C04495G4_mouse_lung_microorganism_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Infected with Mycobacterium tuberculosis	Lung	H&E
C04496D6_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	H&E

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